Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12819870 chr12:129156547 A/G 6.48E-6 178 13.05 27.33 25 KM Plot
PCPG rs12821157 chr12:26888214 C/T 8.43E-5 178 24.6 27.27 5.97 KM Plot
PCPG rs12829733 chr12:26898520 C/G 0.00011 174 24.5 27.83 5.97 KM Plot
PCPG rs12830847 chr12:118477785 G/T 0.000102 173 24.85 27.2 22.77 KM Plot
PCPG rs12865199 chr13:37552942 G/C 0.000329 176 4.17 24.23 25.7 KM Plot
PCPG rs12880050 chr14:74428851 A/G 3.57E-6 177 25.4 28.47 10.3 KM Plot
PCPG rs12881125 chr14:74407050 C/T 0.000122 178 10.43 27.78 25.28 KM Plot
PCPG rs12882271 chr14:74680338 C/G 4.15E-10 172 25.4 28.47 7.4 KM Plot
PCPG rs12883476 chr14:74610098 C/G 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs12883516 chr14:74610227 A/G 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs12883837 chr14:74587315 G/A 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs12883970 chr14:74507985 G/A 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs12883978 chr14:74587390 G/T 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs12884055 chr14:74538381 A/G 0.000185 178 25.28 27.78 10.43 KM Plot
PCPG rs12885276 chr14:74459620 C/T 3.51E-6 177 25.17 30.93 10.3 KM Plot